The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1410
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 751064
End posion on genome 750873
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tccttgtaaa
tRNA gene sequence 
GGGGCTGTGGCCTAGCCCGGCATGGCGATGGGCTCCAGACCCGTCGATCGTGAGTTCGAA
TCTCACCAGCCCCAcct
Downstream region at tRNA end position 
tttttctttt
Secondary structure (Cloverleaf model)
>At1410	Trp	CCA
                   a      Acct tttttctttt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C A C T C     A
      C G A        G      | | | | |     G
    C       T C C G       G T G A G     C
    C         | | |                 T T
    G       T G G C
      G C A        G     CGATC
                    A - T
                    T + G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCTGTGGCCTAGCCCGGCATGGCGATGGGCTCCAGcggataaatgatgaacaacggg
tctaccgagtccttcccgacggggcaggacaatgaggaaccgttggagcactgatagatg
ctcaccagagaactgtaaaagcagttgttcggagatACCCGTCGATCGTGAGTTCGAATC
TCACCAGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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