The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1412
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 829936
End posion on genome 829862
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
aagcccttat
tRNA gene sequence 
GGGATAGTAGGGTAGCTTGGTCCATCCTCGAGCGTTTGGGACGCTTGGACCGCGGTTCAA
ATCCGCGCTATCCCAtcc
Downstream region at tRNA end position 
tttttcatct
Secondary structure (Cloverleaf model)
>At1412	Pro	TGG
                   t      Atcc tttttcatct
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C          T A
                    T     G C G C C     A
    T C G A        A      | | | | |     A
  T         T G G G       C G C G G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     GGAC
                    G + T
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGATAGTAGGGTAGCTTGGTCCATCCTCGAGCGTTTGGGACGCTTGGACCGCGGTTCAA
ATCCGCGCTATCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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