The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1413
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 1509797
End posion on genome 1509721
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
taaacaaacc
tRNA gene sequence 
GGGCCCGTAGCTCAGTCAGGCAGAGCGACTGGCTTTTAACCAGTCGGCCTAGGGTTCAAA
TCCCTACGGGCCCGCCA
Downstream region at tRNA end position 
tgttcttatt
Secondary structure (Cloverleaf model)
>At1413	Lys	TTT
                   c      GCCA tgttcttatt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     A T C C C     A
      T G A        A      | | | | |     A
    C       C T C G       T A G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     CGGCC
                    A - T
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCAGGCAGAGCGACTGGCTTTTAACCAGTCGGCCTAGGGTTCAAA
TCCCTACGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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