The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1415
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 2940457
End posion on genome 2940373
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ttctccaagc
tRNA gene sequence 
GCGAGGGTTGCCCAGCCAGGCCAAAGGCGCCAGACTTAAGATCTGGTATCGAAGGATTTC
GTGGGTTCGAATCCCACCCCTCGCAttt
Downstream region at tRNA end position 
tttgaaaata
Secondary structure (Cloverleaf model)
>At1415	Leu	TAA
                   c      Attt tttgaaaata
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        T      | | | | |     G
  A         C C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TATCGAAGGATTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCCAGGCCAAAGGCGCCAGACTTAAGATCTGGTATCGAAGGATTTC
GTGGGTTCGAATCCCACCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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