The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1417
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 3031244
End posion on genome 3031151
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gcggcaccgc
tRNA gene sequence 
GGGCTCGTGGGGTAGCCAGGATATCCTAATGGGCTTCGAACCCATTGACTCGTGTTCGAA
TCGCGGCGGGCCCGtta
Downstream region at tRNA end position 
atctactttt
Secondary structure (Cloverleaf model)
>At1417	Arg	TCG
                   c      Gtta atctactttt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C G C     A
    C C G A        G      + | | + |     G
  A         T G G G       T C G T G     C
  G           | | +                 T T
  G         T C C T
    A T A          A     TGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGGGTAGCCAGGATATCCTAATGGGCTTCGAagtaagattcttacgaagatA
CCCATTGACTCGTGTTCGAATCGCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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