The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1423
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 4673856
End posion on genome 4673785
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ttcacgatga
tRNA gene sequence 
AGGTCTGTGGTGTAGAGGATATCACTGGAGCCTCCGGAGCTCCGAACCTGGGTTCGATTC
CCAGCAGACCTGcta
Downstream region at tRNA end position 
ttgaattttt
Secondary structure (Cloverleaf model)
>At1423	Arg	CCG
                   a      Gcta ttgaattttt
                     A - T
                     G - C
                     G - C
                     T - A
                     C - G
                     T - A
                     G - C          T T
                    T     G A C C C     A
      A G A        G      | | | | |     G
    G       T G T G       C T G G G     C
    G         | | |                 T T
    A       T C A C
      T A          T     GAAC
                    G - C
                    G - C
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGGTCTGTGGTGTAGAGGATATCACTGGAGCCTCCGGAGCTCCGAACCTGGGTTCGATTC
CCAGCAGACCTG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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