The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1428
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 5346094
End posion on genome 5346020
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
attacgttgt
tRNA gene sequence 
GGGCGCGTGGCCTAGCCCGGATATGGCGGCAGCCTCCTAAGCTGTAAATCGGGGGTTCAA
ATCCCTTCGCGCCCGtca
Downstream region at tRNA end position 
atttctatct
Secondary structure (Cloverleaf model)
>At1428	Arg	CCT
                   t      Gtca atttctatct
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C          T A
                    T     T T C C C     A
    C C G A        G      + + | | |     A
  C         T C C G       G G G G G     C
  G           | | |                 T T
  G         T G G C
    A T A          G     AAATC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCGTGGCCTAGCCCGGATATGGCGGCAGCCTCCTAAGCTGTAAATCGGGGGTTCAA
ATCCCTTCGCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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