The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1433
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 261706
End posion on genome 261777
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ttgatagtga
tRNA gene sequence 
AGGTCTGTAGTGTAGAGGATATCACTGGAGCCTCCGGAGCTCCGAACCTGGGTTCGATTC
CCAGCAGACCTGttt
Downstream region at tRNA end position 
cttaaaaatc
Secondary structure (Cloverleaf model)
>At1433	Arg	CCG
                   a      Gttt cttaaaaatc
                     A - T
                     G - C
                     G - C
                     T - A
                     C - G
                     T - A
                     G - C          T T
                    T     G A C C C     A
      A G A        A      | | | | |     G
    G       T G T G       C T G G G     C
    G         | | |                 T T
    A       T C A C
      T A          T     GAAC
                    G - C
                    G - C
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGGTCTGTAGTGTAGAGGATATCACTGGAGCCTCCGGAGCTCCGAACCTGGGTTCGATTC
CCAGCAGACCTG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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