The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1434
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 466799
End posion on genome 466870
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gttgcagttt
tRNA gene sequence 
GCGTTGATGGTCTAGCGGCTATGACTTGGGCCTTCCAAGCCCAAAACCCGGGTTCAAATC
CCGGTCGGCGCAtta
Downstream region at tRNA end position 
aataattctt
Secondary structure (Cloverleaf model)
>At1434	Gly	TCC
                   t      Atta aataattctt
                     G - C
                     C - G
                     G - C
                     T + G
                     T + G
                     G - C
                     A - T          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       T C T G       C C G G G     C
    G         | | |                 T T
    C       T G A C
      T A          T     AAAC
                    T - A
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGTTGATGGTCTAGCGGCTATGACTTGGGCCTTCCAAGCCCAAAACCCGGGTTCAAATC
CCGGTCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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