The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1435
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 466965
End posion on genome 467049
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
aaacattagt
tRNA gene sequence 
GCGAGGGTTGCCCAGCTAGGTCAAAGGCGATGGGCTTAGGACCCATTTTCGTAGGAATTC
GTGCGTTCGAATCGCACCCCTCGCAtct
Downstream region at tRNA end position 
attttactca
Secondary structure (Cloverleaf model)
>At1435	Leu	TAG
                   t      Atct attttactca
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C G C     A
    T C G A        T      | | | | |     G
  A         C C C G       G T G C G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTTCGTAGGAATTC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCTAGGTCAAAGGCGATGGGCTTAGGACCCATTTTCGTAGGAATTC
GTGCGTTCGAATCGCACCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK