The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1437
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 704447
End posion on genome 704521
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
agctcttcat
tRNA gene sequence 
GGGCGCGTGGCCTAGCCAGGATATGGCGGCAGCCTCCTAAGCTGTAAATCGGGGGTTCAA
ATCCCTTCGCGCCCGcta
Downstream region at tRNA end position 
atttccttaa
Secondary structure (Cloverleaf model)
>At1437	Arg	CCT
                   t      Gcta atttccttaa
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C          T A
                    T     T T C C C     A
    C C G A        G      + + | | |     A
  A         T C C G       G G G G G     C
  G           | | |                 T T
  G         T G G C
    A T A          G     AAATC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCGTGGCCTAGCCAGGATATGGCGGCAGCCTCCTAAGCTGTAAATCGGGGGTTCAA
ATCCCTTCGCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK