The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1442
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1623269
End posion on genome 1623384
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tatacattgt
tRNA gene sequence 
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAGTC
TGGGAGGCGGGAcct
Downstream region at tRNA end position 
aaacaatttc
Secondary structure (Cloverleaf model)
>At1442	Tyr	GTA
                   t      Acct aaacaatttc
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T G
                    T     G G G T C     A
        G A        A      | | | + |     G
      T     C T C A       C C C G G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGttcggctcgtgcgggtaaaattac
ccgtacatttccgcgcaggcACCGCGATGTCCCCGGTTCGAGTCTGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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