The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1443
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1623497
End posion on genome 1623569
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
acactgaagt
tRNA gene sequence 
GTCCGGATAGTGTAGAGGCCTATCATGGAGCCCTGTCGAGGCTCCGACTCGGGTTCGAAT
CCCGGTCCGGGCGttt
Downstream region at tRNA end position 
ccaaattaaa
Secondary structure (Cloverleaf model)
>At1443	Asp	GTC
                   t      Gttt ccaaattaaa
                     G - C
                     T + G
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
      A G A        A      + | | | |     G
    G       T G T G       T C G G G     C
    G         | | +                 T T
    C       T C A T
      C T A        G     CGAC
                    G - C
                    A - T
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCGGATAGTGTAGAGGCCTATCATGGAGCCCTGTCGAGGCTCCGACTCGGGTTCGAAT
CCCGGTCCGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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