The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1446
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 2435508
End posion on genome 2435584
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ccttacattt
tRNA gene sequence 
GGGCCCGTAGCTTAGCTTGGTGGAGCGCACGGCTGATAACCGTGAGGTCCTGCGTTCGAA
TCGCAGCGGGCCCACCA
Downstream region at tRNA end position 
caatatgata
Secondary structure (Cloverleaf model)
>At1446	Ile	GAT
                   t      ACCA caatatgata
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A C G C     A
      C G A        A      | | | | |     G
    T       T T C G       C T G C G     C
    T       + | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCTTGGTGGAGCGCACGGCTGATAACCGTGAGGTCCTGCGTTCGAA
TCGCAGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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