The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1449
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 2651461
End posion on genome 2651532
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gatccccgtg
tRNA gene sequence 
GCCGGGGTAGGGTAGAGGCCATCCTGTGGCCCTGTGGAGGCTACGACCCGAGTTCGATTC
TCGGTCCCGGCCcta
Downstream region at tRNA end position 
attatttttt
Secondary structure (Cloverleaf model)
>At1449	His	GTG
                   g      Ccta attatttttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T T
                    T     G G C T C     A
      A G A        A      | | | | |     G
    G       T G G G       C C G A G     C
    G         | | +                 T T
    C       T C C T
      C A          G     CGAC
                    T - A
                    G + T
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGGGTAGAGGCCATCCTGTGGCCCTGTGGAGGCTACGACCCGAGTTCGATTC
TCGGTCCCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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