The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1451
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 3327097
End posion on genome 3327168
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
acaacagatt
tRNA gene sequence 
GCCAAGGTGGCAGAGCGGTTACGCAATCGCCAGCAGAGCGATTCACTCCTGGTTCAAATC
CGGACCTTGGCTttt
Downstream region at tRNA end position 
tttattttta
Secondary structure (Cloverleaf model)
>At1451	Cys	GCA
                   t      Tttt tttattttta
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     A G G C C     A
        G A        G        | + | |     A
      C     G A C G       C C T G G     C
      G         | |                 T T
      G     A C G C
        T T        A     TCACT
                    A - T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  A       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTGGCAGAGCGGTTACGCAATCGCCAGCAGAGCGATTCACTCCTGGTTCAAATC
CGGACCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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