The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1452
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4006296
End posion on genome 4006378
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ttccgtaaat
tRNA gene sequence 
GCGGGAGTAACCAAGCGGTCAACGGTGGCAGACTCAAGATCTGTTCGTGCAGACGTTCAG
GGGTTCGAATCCCTTCTCCCGCActa
Downstream region at tRNA end position 
aatttattag
Secondary structure (Cloverleaf model)
>At1452	Leu	CAA
                   t      Acta aatttattag
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C          T A
                    T     T T C C C     A
      C G A        A      | + | | |     G
    G       A C C A       A G G G G     C
    G         | | |                 T T
    T       C G G T
      C A A        G     TCGTGCAGACGTTC
                    G + T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGAGTAACCAAGCGGTCAACGGTGGCAGACTCAAGATCTGTTCGTGCAGACGTTCAG
GGGTTCGAATCCCTTCTCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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