The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1453
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4032947
End posion on genome 4033019
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
aaatcatcga
tRNA gene sequence 
AGCCCGGTAGTGTAGTGGTCAATCATGCGGGACTCTGGATCCTGCAACCTCGGTTCGAAT
CCGTGCCGGGCTAtac
Downstream region at tRNA end position 
ataattctta
Secondary structure (Cloverleaf model)
>At1453	Gln	CTG
                   a      Atac ataattctta
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G T G C C     A
      T G A        A      |   | | |     G
    G       T G T G       C T C G G     C
    G         | | +                 T T
    T       T C A T
      C A A        G     CAAC
                    C - G
                    G + T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTAGTGTAGTGGTCAATCATGCGGGACTCTGGATCCTGCAACCTCGGTTCGAAT
CCGTGCCGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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