The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1454
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4042057
End posion on genome 4042141
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ttttcaaaga
tRNA gene sequence 
GCGAGGGTTGCCCAGCACGGTCAAAGGCGCCGGACTTAAGATCCGGTATCGAAGGATTTC
GTGGGTTCGAATCCCACCCCTCGCActg
Downstream region at tRNA end position 
actttttaca
Secondary structure (Cloverleaf model)
>At1454	Leu	TAA
                   a      Actg actttttaca
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    A C G A        T      | | | | |     G
  C         C C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TATCGAAGGATTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCACGGTCAAAGGCGCCGGACTTAAGATCCGGTATCGAAGGATTTC
GTGGGTTCGAATCCCACCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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