The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1455
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4048993
End posion on genome 4049077
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ccttcaatat
tRNA gene sequence 
GCGAGGGTTGCCCAGCCAGGCCAAAGGCGCCAGACTTAAGATCTGGTATCGAAGGATTTC
GTGGGTTCGAATCCCACTCCTCGCActa
Downstream region at tRNA end position 
ttttattacg
Secondary structure (Cloverleaf model)
>At1455	Leu	TAA
                   t      Acta ttttattacg
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G + T          T A
                    T     C A C C C     A
    C C G A        T      | | | | |     G
  A         C C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TATCGAAGGATTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCCAGGCCAAAGGCGCCAGACTTAAGATCTGGTATCGAAGGATTTC
GTGGGTTCGAATCCCACTCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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