The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1456
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4052645
End posion on genome 4052729
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aattcaattt
tRNA gene sequence 
GCGAGAGTTGCCCAGCCCGGTCAAAGGCGCCGGACTTAAGATCCGGTATCGAAGGATTTC
GTGGTTTCGAATTTCATCCCTCGCAtac
Downstream region at tRNA end position 
ctaacgcttt
Secondary structure (Cloverleaf model)
>At1456	Leu	TAA
                   t      Atac ctaacgcttt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     A   C
                     G - C          T A
                    T     T A C T T     A
    C C G A        T      + | | +       G
  C         C C C G       G T G G T     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TATCGAAGGATTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGAGTTGCCCAGCCCGGTCAAAGGCGCCGGACTTAAGATCCGGTATCGAAGGATTTC
GTGGTTTCGAATTTCATCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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