The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1460
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4552668
End posion on genome 4552739
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
ccatcatagg
tRNA gene sequence 
ACATCAGTAGTGTAGCGGTCATCACCGGGCGTTGCCAACGCTCGAACCCGGGTTCGAATC
CCGGCTGGTGTAtaa
Downstream region at tRNA end position 
cttttttaat
Secondary structure (Cloverleaf model)
>At1460	Gly	GCC
                   g      Ataa cttttttaat
                     A - T
                     C - G
                     A - T
                     T + G
                     C - G
                     A - T
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    G       T G T G       C C G G G     C
    G         | | |                 T T
    T       T C A C
      C A          C     GAAC
                    G - C
                    G + T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
ACATCAGTAGTGTAGCGGTCATCACCGGGCGTTGCCAACGCTCGAACCCGGGTTCGAATC
CCGGCTGGTGTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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