The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1466
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 92160
End posion on genome 92076
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
atatcgctat
tRNA gene sequence 
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTTTCGTAGGAATTC
GTGGGTTCGAATCCCATCCCTCGCAttt
Downstream region at tRNA end position 
agtttttttt
Secondary structure (Cloverleaf model)
>At1466	Leu	GAG
                   t      Attt agtttttttt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T A C C C     A
    C C G A        T      + | | | |     G
  A         C C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTTCGTAGGAATTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTTTCGTAGGAATTC
GTGGGTTCGAATCCCATCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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