The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1467
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 92377
End posion on genome 92293
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
aatacgaaat
tRNA gene sequence 
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTTTCGTAGGAATTC
GTGGGTTCGAATCCCATCCCTCGCActa
Downstream region at tRNA end position 
aatttcttaa
Secondary structure (Cloverleaf model)
>At1467	Leu	GAG
                   t      Acta aatttcttaa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T A C C C     A
    C C G A        T      + | | | |     G
  A         C C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTTCGTAGGAATTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTTTCGTAGGAATTC
GTGGGTTCGAATCCCATCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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