The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1469
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 147670
End posion on genome 147599
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
gagcatcagt
tRNA gene sequence 
GCCTTGGTGGCTTAGGGGTATAGCGCGTCCTTGGTAAGGACGAGGTCGCGGGTTCAAATC
CCGCCCGAGGCTtac
Downstream region at tRNA end position 
tactaccagt
Secondary structure (Cloverleaf model)
>At1469	Thr	GGT
                   t      Ttac tactaccagt
                     G - C
                     C - G
                     C - G
                     T - A
                     T + G
                     G - C
                     G - C          T A
                    T     C G C C C     A
        G A        G      | | | | |     A
      G     T T C G       G C G G G     C
      G       | | |                 T T
      G     T A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTTGGTGGCTTAGGGGTATAGCGCGTCCTTGGTAAGGACGAGGTCGCGGGTTCAAATC
CCGCCCGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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