The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1473
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 474096
End posion on genome 474022
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
ataacaagtt
tRNA gene sequence 
GCTCCGATAGTGTAGCTCGGCCAATCATTCAGGACTCTCACTCCTGCGACTGGGGTTCAA
ATCCCCATCGGAGCActt
Downstream region at tRNA end position 
ttctatatta
Secondary structure (Cloverleaf model)
>At1473	Glu	CTC
                   t      Actt ttctatatta
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     A C C C C     A
    T C G A        A      | | | | |     A
  C         T G T G       T G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        T     CGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGATAGTGTAGCTCGGCCAATCATTCAGGACTCTCACTCCTGCGACTGGGGTTCAA
ATCCCCATCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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