The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1476
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1135518
End posion on genome 1135447
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gatcaagaat
tRNA gene sequence 
GCCAAGATGGCGGAGCGGCTACGCAATCGCCTGCAGAGCGATTCCATTCCGGTTCGAATC
CGGATCTTGGCTtct
Downstream region at tRNA end position 
tctttaaaca
Secondary structure (Cloverleaf model)
>At1476	Cys	GCA
                   t      Ttct tctttaaaca
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     A - T          T A
                    T     A G G C C     A
        G A        G      | | | | |     G
      C     G G C G       T C C G G     C
      G       | | |                 T T
      G     A C G C
        C T        A     TCCAT
                    A - T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGATGGCGGAGCGGCTACGCAATCGCCTGCAGAGCGATTCCATTCCGGTTCGAATC
CGGATCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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