The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1478 |
Genome ID | CP000099 |
Phylum/Class | Euryarchaeota |
Species | Methanosarcina barkeri [CP000099] |
Start position on genome
|
1315751
|
End posion on genome
|
1315680
|
Amino Acid
|
Arg
|
Anticodon
|
GCG
|
Upstream region at tRNA start position
|
gctcgcttgt
|
tRNA gene sequence
|
GTCCCGATAGGGTAGTGGATATCCTTGAGGCCTGCGGAGCCTTAGACCTGAGTTCAAGTC TCAGTCGGGACGtaa
|
Downstream region at tRNA end position
|
attcttattt
|
Secondary structure (Cloverleaf model) | >At1478 Arg GCG
t Gtaa attcttattt
G - C
T - A
C - G
C - G
C - G
G - C
A - T T G
T G A C T C A
T G A A | | | | | A
G T G G G C T G A G C
G | | + T T
A T C C T
T A T AGAC
G + T
A - T
G - C
G - C
C - G
C A
T G
G C G
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GTCCCGATAGGGTAGTGGATATCCTTGAGGCCTGCGGAGCCTTAGACCTGAGTTCAAGTC TCAGTCGGGACG |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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