The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1480
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1548441
End posion on genome 1548368
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
ataaaatcaa
tRNA gene sequence 
GTCTCGTTGGCTCAGCCCGATAGAGCTAGTGATTTGTAATCACTAGGTCGCGTGTTCAAA
TCACGCACGGGGTTttt
Downstream region at tRNA end position 
actatttttt
Secondary structure (Cloverleaf model)
>At1480	Thr	TGT
                   a      Tttt actatttttt
                     G + T
                     T + G
                     C - G
                     T + G
                     C - G
                     G - C
                     T - A          T A
                    T     C G C A C     A
      C G A        G      | | | | |     A
    C       C T C G       G C G T G     C
    C       | | | |                 T T
    G       G A G C
      A T A        T     AGGTC
                    A - T
                    G - C
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCTCGTTGGCTCAGCCCGATAGAGCTAGTGATTTGTAATCACTAGGTCGCGTGTTCAAA
TCACGCACGGGGTT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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