The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1481
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1551579
End posion on genome 1551506
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
ttttccaatt
tRNA gene sequence 
GCCTCGTTGGCTCAGCCCGGTAGAGCGAGTGACTTGTAATCACTAGGTCGCGTGTTCAAA
TCACGCACGGGGCTtct
Downstream region at tRNA end position 
gaatttttgt
Secondary structure (Cloverleaf model)
>At1481	Thr	TGT
                   t      Ttct gaatttttgt
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     T - A          T A
                    T     C G C A C     A
      C G A        G      | | | | |     A
    C       C T C G       G C G T G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    G - C
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGTTGGCTCAGCCCGGTAGAGCGAGTGACTTGTAATCACTAGGTCGCGTGTTCAAA
TCACGCACGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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