The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1484
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1842285
End posion on genome 1842212
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
aaaacaacat
tRNA gene sequence 
GGGCTCGTGGTCTAGACGGTTATGACGTCGCCTTCACACGGCGGAGGTCCTGGATTCGAA
TTCCAGCGGGCCCActt
Downstream region at tRNA end position 
aattattctt
Secondary structure (Cloverleaf model)
>At1484	Val	CAC
                   t      Actt aattattctt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G A C C T     A
      A G A        G      | | | | |     G
    C       T C T G       C T G G A     C
    G         | | |                 T T
    G       T G A C
      T T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGACGGTTATGACGTCGCCTTCACACGGCGGAGGTCCTGGATTCGAA
TTCCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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