The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1487
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1927445
End posion on genome 1927362
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aaaacaaaat
tRNA gene sequence 
GCCCAGGTAGTCTAGTGGTAAGGCGACGGTCTCGAAAACCGTTTCTTCTTTGGGAGAGCG
CAGGTTCAAATCCTGCCCTGGGCGtgc
Downstream region at tRNA end position 
agtcaaaaaa
Secondary structure (Cloverleaf model)
>At1487	Ser	CGA
                   t      Gtgc agtcaaaaaa
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C          T A
                    T     C G T C C     A
        G A        A      | | | | |     A
      T     T C T G       G C A G G     C
      G     | | + |                 T T
      G     A G G C
        T A        G     TTCTTCTTTGGGAGAGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCAGGTAGTCTAGTGGTAAGGCGACGGTCTCGAAAACCGTTTCTTCTTTGGGAGAGCG
CAGGTTCAAATCCTGCCCTGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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