The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1492
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 3995529
End posion on genome 3995436
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position
gctgcatcaa
tRNA gene sequence
GGGCTCGTAGGGTAGCCAGGATATCCTAATGGGCTTCGAACCCATTGACTCGTGTTCGAA
TCGCGGCGGGCCCGctt
Downstream region at tRNA end position
actctctttt
Secondary structure (Cloverleaf model)
>At1492	Arg	TCG
                   a      Gctt actctctttt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C G C     A
    C C G A        A      + | | + |     G
  A         T G G G       T C G T G     C
  G           | | +                 T T
  G         T C C T
    A T A          A     TGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGGGTAGCCAGGATATCCTAATGGGCTTCGAagtaagataattacgaagatA
CCCATTGACTCGTGTTCGAATCGCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK