The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1493
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4504921
End posion on genome 4504837
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
gctacatcgt
tRNA gene sequence 
GCGAGAGTTGCCCAGCCAGGTCAAAGGCGCCAGGTTCAGAGCCTGGTTTCGTAGGAATTC
GTGCGTTCGAATCGCACCTCTCGCActa
Downstream region at tRNA end position 
aactttttta
Secondary structure (Cloverleaf model)
>At1493	Leu	CAG
                   t      Acta aactttttta
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C          T A
                    T     C A C G C     A
    C C G A        T      | | | | |     G
  A         C C C G       G T G C G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTTCGTAGGAATTC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       G
                  T       A
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGAGTTGCCCAGCCAGGTCAAAGGCGCCAGGTTCAGAGCCTGGTTTCGTAGGAATTC
GTGCGTTCGAATCGCACCTCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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