The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1494
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 4677224
End posion on genome 4677152
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
agtctctcta
tRNA gene sequence 
GGGCTTGTAGATCAGATGGAAGATCGCTGCCTTTGCAAGGCAGAGGCCCTGGGTTCGAAT
CCCAGCAAGTCCAttt
Downstream region at tRNA end position 
ttatgcaccc
Secondary structure (Cloverleaf model)
>At1494	Ala	TGC
                   a      Attt ttatgcaccc
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     G A C C C     A
      A G A        A      | | | | |     G
    T       C T A G       C T G G G     C
    G       | | | |                 T T
    G       G A T C
      A A          G     AGGCC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTAGATCAGATGGAAGATCGCTGCCTTTGCAAGGCAGAGGCCCTGGGTTCGAAT
CCCAGCAAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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