The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1505
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 493238
End posion on genome 493311
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
tattcctttc
tRNA gene sequence 
GGGCCCGTAGCTTAGCCTGGTGGAGCGCACGGCTGATAACCGTGAGGTCCTGCGTTCGAA
TCGCAGCGGGCCCAtat
Downstream region at tRNA end position 
acttttttac
Secondary structure (Cloverleaf model)
>At1505	Ile	GAT
                   c      Atat acttttttac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A C G C     A
      C G A        A      | | | | |     G
    C       T T C G       C T G C G     C
    T       + | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCCTGGTGGAGCGCACGGCTGATAACCGTGAGGTCCTGCGTTCGAA
TCGCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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