The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1510
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 945297
End posion on genome 945368
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gttgcagttt
tRNA gene sequence 
GCGTTGATGGTCTAGCGGCTATGACTTGGGCCTTCCAAGCCCAAAACCCGGGTTCGAATC
CCGGTCGGCGCAttt
Downstream region at tRNA end position 
aatatttttc
Secondary structure (Cloverleaf model)
>At1510	Gly	TCC
                   t      Attt aatatttttc
                     G - C
                     C - G
                     G - C
                     T + G
                     T + G
                     G - C
                     A - T          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       T C T G       C C G G G     C
    G         | | |                 T T
    C       T G A C
      T A          T     AAAC
                    T - A
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGTTGATGGTCTAGCGGCTATGACTTGGGCCTTCCAAGCCCAAAACCCGGGTTCGAATC
CCGGTCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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