The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1511
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 945437
End posion on genome 945521
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
caacattagt
tRNA gene sequence 
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGATGGGCTTAGGACCCATTTTCGTAGGAATTC
GTGCGTTCGAATCGCACCCCTCGCActt
Downstream region at tRNA end position 
atatttaaag
Secondary structure (Cloverleaf model)
>At1511	Leu	TAG
                   t      Actt atatttaaag
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C G C     A
    C C G A        T      | | | | |     G
  A         C C C G       G T G C G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTTCGTAGGAATTC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGATGGGCTTAGGACCCATTTTCGTAGGAATTC
GTGCGTTCGAATCGCACCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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