The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1515
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 2099629
End posion on genome 2099703
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gtaccagtaa
tRNA gene sequence 
GGGACCGTAGGGTAGCTTGGTCCATCCTTCGGCGTTCGGGACGCCGGAACCTGAGTTCGA
ATCTCAGCGGTCCCAttt
Downstream region at tRNA end position 
tccctttcaa
Secondary structure (Cloverleaf model)
>At1515	Pro	CGG
                   a      Attt tccctttcaa
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G A C T C     A
    T C G A        A      | | | | |     G
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        T     GAAC
                    C - G
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTAGGGTAGCTTGGTCCATCCTTCGGCGTTCGGGACGCCGGAACCTGAGTTCGA
ATCTCAGCGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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