The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1524
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 2997633
End posion on genome 2997704
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
tttcgtaaaa
tRNA gene sequence 
GGGCTCGTAGATCAGGGGAAGATCGTTACGTTCGCAACGTAAAGGCCGCGGGTTCAAATC
CCGCCGAGTCCActa
Downstream region at tRNA end position 
acaaatttat
Secondary structure (Cloverleaf model)
>At1524	Ala	CGC
                   a      Acta acaaatttat
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     A
      G     C T A G       G C G G G     C
      G     | | | |                 T T
      G     G A T C
        A A        G     AGGCC
                    T - A
                    T - A
                    A - T
                    C - G
                    G - C
                  T       A
                  T       A
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGATCAGGGGAAGATCGTTACGTTCGCAACGTAAAGGCCGCGGGTTCAAATC
CCGCCGAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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