The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1525
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 3637591
End posion on genome 3637673
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
tccgaaaagc
tRNA gene sequence 
GCGGGAGTAACCAAGCGGTCAACGGTGGCAGACTCAAGATCTGTTCGTGCAGACGTTCAG
GGGTTCGAATCCCTTCTCCCGCAcct
Downstream region at tRNA end position 
gaaattctca
Secondary structure (Cloverleaf model)
>At1525	Leu	CAA
                   c      Acct gaaattctca
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C          T A
                    T     T T C C C     A
      C G A        A      | + | | |     G
    G       A C C A       A G G G G     C
    G         | | |                 T T
    T       C G G T
      C A A        G     TCGTGCAGACGTTC
                    G + T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGAGTAACCAAGCGGTCAACGGTGGCAGACTCAAGATCTGTTCGTGCAGACGTTCAG
GGGTTCGAATCCCTTCTCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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