The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1530
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 798626
End posion on genome 798555
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ttaacaatga
tRNA gene sequence 
AGGTCTGTGGTGTAGAGGATATCACTGGAGCCTCCGGAGCTCCGAACCTGGGTTCGATTC
CCAGCAGACCTGctt
Downstream region at tRNA end position 
cttaactcca
Secondary structure (Cloverleaf model)
>At1530	Arg	CCG
                   a      Gctt cttaactcca
                     A - T
                     G - C
                     G - C
                     T - A
                     C - G
                     T - A
                     G - C          T T
                    T     G A C C C     A
      A G A        G      | | | | |     G
    G       T G T G       C T G G G     C
    G         | | |                 T T
    A       T C A C
      T A          T     GAAC
                    G - C
                    G - C
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGGTCTGTGGTGTAGAGGATATCACTGGAGCCTCCGGAGCTCCGAACCTGGGTTCGATTC
CCAGCAGACCTG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK