The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1531
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 951902
End posion on genome 951828
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
ttaacagcgt
tRNA gene sequence 
GCTCCGATAGTGTAGCTCGGCCAATCATTCAGGACTCTCACTCCTGCGACTGGGGTTCAA
ATCCCCATCGGAGCActt
Downstream region at tRNA end position 
ttcctttttt
Secondary structure (Cloverleaf model)
>At1531	Glu	CTC
                   t      Actt ttcctttttt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     A C C C C     A
    T C G A        A      | | | | |     A
  C         T G T G       T G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        T     CGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGATAGTGTAGCTCGGCCAATCATTCAGGACTCTCACTCCTGCGACTGGGGTTCAA
ATCCCCATCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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