The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1532
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1111332
End posion on genome 1111248
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agttcaatgt
tRNA gene sequence 
GACGAGATAGCCAAGCCCGGTATGGCGCGGGATTGCTAATCCCGTGATGCTCCGCATCCC
GGGGGTTCGAGTCCCCCTCTCGTCGttt
Downstream region at tRNA end position 
cttttttaat
Secondary structure (Cloverleaf model)
>At1532	Ser	GCT
                   t      Gttt cttttttaat
                     G - C
                     A - T
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T          T G
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       A C C G       G G G G G     C
    C       | | | |                 T T
    G       T G G C
      G T A        G     TGATGCTCCGCATCCC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GACGAGATAGCCAAGCCCGGTATGGCGCGGGATTGCTAATCCCGTGATGCTCCGCATCCC
GGGGGTTCGAGTCCCCCTCTCGTCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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