The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1533
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1212815
End posion on genome 1212741
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
agttcattgt
tRNA gene sequence 
GGGCGCGTGGCCTAGCCCGGATATGGCGGCAGCCTCCTAAGCTGTAAATCGGGGGTTCAA
ATCCCTTCGCGCCCGcta
Downstream region at tRNA end position 
aaacccatct
Secondary structure (Cloverleaf model)
>At1533	Arg	CCT
                   t      Gcta aaacccatct
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C          T A
                    T     T T C C C     A
    C C G A        G      + + | | |     A
  C         T C C G       G G G G G     C
  G           | | |                 T T
  G         T G G C
    A T A          G     AAATC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCGTGGCCTAGCCCGGATATGGCGGCAGCCTCCTAAGCTGTAAATCGGGGGTTCAA
ATCCCTTCGCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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