The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1535
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1273925
End posion on genome 1273854
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
gctcgcttgc
tRNA gene sequence 
GTCCCGATAGGGTAGTGGATATCCTTGAGGCCTGCGGAGCCTTAGACCTGAGTTCAAGTC
TCAGTCGGGACGtaa
Downstream region at tRNA end position 
atttttattt
Secondary structure (Cloverleaf model)
>At1535	Arg	GCG
                   c      Gtaa atttttattt
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T          T G
                    T     G A C T C     A
      T G A        A      | | | | |     A
    G       T G G G       C T G A G     C
    G         | | +                 T T
    A       T C C T
      T A          T     AGAC
                    G + T
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCCGATAGGGTAGTGGATATCCTTGAGGCCTGCGGAGCCTTAGACCTGAGTTCAAGTC
TCAGTCGGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK