The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1536
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1516966
End posion on genome 1516895
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tccactttgt
tRNA gene sequence 
GCCAAGGTGGCGGAGCGGCTACGCAATCGCCTGCAGAGCGATACCATTCCGGTTCGAATC
CGGACCTTGGCTttt
Downstream region at tRNA end position 
taaacacttt
Secondary structure (Cloverleaf model)
>At1536	Cys	GCA
                   t      Tttt taaacacttt
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     A G G C C     A
        G A        G      | | | | |     G
      C     G G C G       T C C G G     C
      G       | | |                 T T
      G     A C G C
        C T        A     ACCAT
                    A - T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTGGCGGAGCGGCTACGCAATCGCCTGCAGAGCGATACCATTCCGGTTCGAATC
CGGACCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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