The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1540
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1790456
End posion on genome 1790343
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
gtatcattgt
tRNA gene sequence 
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAGTC
TGGGAGGCGGGAcct
Downstream region at tRNA end position 
gaaacattca
Secondary structure (Cloverleaf model)
>At1540	Tyr	GTA
                   t      Acct gaaacattca
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T G
                    T     G G G T C     A
        G A        A      | | | + |     G
      T     C T C A       C C C G G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGttcggctcgtgcgggcaacctccc
gtacatctctgcgcaggcACCGCGATGTCCCCGGTTCGAGTCTGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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