The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1541
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1833846
End posion on genome 1833773
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
gcttcattgc
tRNA gene sequence 
GCCTCGTTGGCTCAGCCCGGTAGAGCGAGTGACTTGTAATCACTAGGTCGCGTGTTCGAA
TCACGCACGAGGCTtcg
Downstream region at tRNA end position 
tactttcttt
Secondary structure (Cloverleaf model)
>At1541	Thr	TGT
                   c      Ttcg tactttcttt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     T - A          T A
                    T     C G C A C     A
      C G A        G      | | | | |     G
    C       C T C G       G C G T G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    G - C
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGTTGGCTCAGCCCGGTAGAGCGAGTGACTTGTAATCACTAGGTCGCGTGTTCGAA
TCACGCACGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK