The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1542
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 2015265
End posion on genome 2015192
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
ttaatttcat
tRNA gene sequence 
GGGCTCGTGGTCTAGACGGTTATGACGTCGCCTTCACACGGCGGAGGTCCTGAGTTCGAA
TCTCAGCGGGCCCActt
Downstream region at tRNA end position 
ttatatgaat
Secondary structure (Cloverleaf model)
>At1542	Val	CAC
                   t      Actt ttatatgaat
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G A C T C     A
      A G A        G      | | | | |     G
    C       T C T G       C T G A G     C
    G         | | |                 T T
    G       T G A C
      T T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGACGGTTATGACGTCGCCTTCACACGGCGGAGGTCCTGAGTTCGAA
TCTCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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